PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.5KG517700.2.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family MIKC_MADS
Protein Properties Length: 173aa    MW: 20216.2 Da    PI: 7.5024
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.5KG517700.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF75.15.7e-24958150
                         S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
               SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                         krien ++rq tf kRr g++KKA ELSvLCd++ ++++fs++gkly y 
  Pavir.5KG517700.2.p  9 KRIENPTQRQSTFYKRRDGLFKKARELSVLCDVDLLLLLFSTSGKLYHYL 58
                         79*********************************************996 PP

2K-box31.76.3e-1272169198
                K-box   1 yqkssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqee 90 
                          y++++++++++   ++ + el+k ++  e +++e+R +  +d e+ ++  L+ Le++Le ++ k+Rs K++ +  +i +l ++ +  qee
  Pavir.5KG517700.2.p  72 YEAATHTKVWTDIRQERRAELEKAEQMCELMEKELRFMTVDDGEQYTVPSLELLEHNLEAAMHKVRSEKDRKIGGEITYLENMIRGRQEE 161
                          566778889**************************************************************************9999999 PP

                K-box  91 nkaLrkkl 98 
                             L  k+
  Pavir.5KG517700.2.p 162 RYGLCDKV 169
                          98887765 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004322.6E-32160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006628.581161IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.14E-28291IPR002100Transcription factor, MADS-box
PRINTSPR004041.7E-23323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003196.2E-231057IPR002100Transcription factor, MADS-box
PRINTSPR004041.7E-232338IPR002100Transcription factor, MADS-box
PRINTSPR004041.7E-233859IPR002100Transcription factor, MADS-box
PfamPF014861.1E-1284169IPR002487Transcription factor, K-box
PROSITE profilePS5129710.23385172IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 173 aa     Download sequence    Send to blast
MGRGRSEIKR IENPTQRQST FYKRRDGLFK KARELSVLCD VDLLLLLFST SGKLYHYLSP  60
TVPSVKDLVE RYEAATHTKV WTDIRQERRA ELEKAEQMCE LMEKELRFMT VDDGEQYTVP  120
SLELLEHNLE AAMHKVRSEK DRKIGGEITY LENMIRGRQE ERYGLCDKVS IQ*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.203290.0stem
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9750460.0EU975046.1 Zea mays clone 465896 MADS-box transcription factor 32 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004969810.11e-120PREDICTED: MADS-box transcription factor 32 isoform X2
SwissprotQ8S1511e-106MAD32_ORYSJ; MADS-box transcription factor 32
TrEMBLK3XM651e-110K3XM65_SETIT; Uncharacterized protein
STRINGSi002988m1e-110(Setaria italica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G09960.22e-23MIKC_MADS family protein